Uhlén Lab - Downloads
ProtocolsProtocols for calcium imaging buffers
Immuno staining of cultured cells
Immuno staining of tissue slices
Spectral AnalysisSpectralAnalysis (Version 3.0) is a tool written for MATLAB that performs spectral analysis on calcium oscillation data. The zipped file (SpectralAnalysis-v3.zip) includes the main file and program (SpectralAnalysis.m), the subroutines that read files into the program (readFile.m), the subroutines that write information to files (writeFile.m), instructions on installing and executing the program (readme.txt), and three different samples of oscillation data (samples.txt). A file called standard.ini, which does not come with the zipped files, will be created by the SpectralAnalysis program the first time it is executed and stores the latest input values entered by the user.
Pick CellsPickCells (Version 1.0) is a tool written for MATLAB that helps you to select out different calcium responding cells from a set of recordings.
Selected publications available for download.Uhlén P, Fritz N, Smedler E, Malmersjö S, Kanatani S "Calcium Signaling in Neocortical Development"
Dev Neurobiol Apr;75(4):360-8 (2015) Review
Smedler E, Malmersjö S, Uhlén P "Network Analysis of Time-Lapse Microscopy Recordings"
Smedler E, Uhlén P "Frequency Decoding of Calcium Oscillations"
Uhlén P, Fritz N "Biochemistry of Calcium Oscillations"
Uhlén P "Spectral Analysis of Calcium Oscillations"
Bäck T, et al. "An educational tool For Demonstrating the TOF-PET Technique"
Useful reading"The Clean Microscope" from Zeiss
"Microscopy from the very beginning" from Zeiss
"Basics of Light Microscopy & Imaging" from Olympus
|[ Department of Medical Biochemistry and Biophysics | Karolinska Institutet ]|
| Updated: March 4, 2019